DiskBoss Server is a server-based product version, which runs in the background as a service and is capable of executing all types of disk space analysis and file management operations in a fully automatic and unattended mode.

DiskBoss Server may be managed and configured locally or through the network using a freeware network client GUI application, the DiskBoss command line utility or the DiskBoss Server API, which may be used to integrate DiskBoss' disk analysis and file management capabilities into other products and solutions.

The DiskBoss Client GUI application is very similar to the main DiskBoss GUI application providing standard dialogs for all types of files management operations supported by DiskBoss. The client GUI application allows one to connect to a DiskBoss server locally or through the network, add, edit or delete disk space analysis or file management commands, control running operations and manage the server configuration options. In addition, the client GUI application provides the ability to export disk space analysis commands defined and tested in the regular DiskBoss GUI application to the XML format and import these commands to DiskBoss Server for automatic execution in the background.